##########################################################################################
# template for downloading map files associated with the 2015 EMDataBank Model Challenge #
##########################################################################################
# Before running, uncomment the rsync command of your preferred download site.
# If you do not want to download files for every target, adjust "foreach" to your
# desired download list.
#
# Individual target EMDB entry ids are:
# 1. Tobacco Mosaic Virus EMD-2842
# 2. T20S Proteasome      EMD-5623 EMD-6287
# 3. GroEL                EMD-6422
# 4. TrpV1 Channel        EMD-5778
# 5. Brome Mosaic Virus   EMD-6000
# 6. Beta Galactosidase   EMD-5995 EMD-2984
# 7. Gamma Secretase      EMD-2677 EMD-3061
# 8. Ribosome             EMD-2847 EMD-6316
#
# Following download, each target map will have it's own directory with EMDB entry id.
# subdirectory "map" contains the depositor's original map, which may have been masked/filtered.
# subdirectory "other" contains additional maps specifically requested for the challenge.
# filenames in most cases are: full reconstruction (no masking/filtering):   EMD-####-full.map.gz
#                  half-maps : EMD-####-half-1.map.gz; EMD-####-half-2.map.gz
#                  mask (if used to calculate FSC) : EMD-####-FSC-mask.map.gz
# Full guidelines for the maps that may be used either for modelling or validation in the challenge
# for each target are provided in the 2015 Model Challenge Guide http://bit.ly/1Gcexvi
##########################################################################################
#/bin/csh -f

foreach entry(2842 5623 6287 6422 5778 6000 5995 2984 2677 3061 2847 6316)

# download from EUROPE (PDBe)
#rsync -rlpt -v -z --delete rsync.ebi.ac.uk::pub/databases/emdb/structures/EMD-${entry}/ ./EMD-${entry}

# download from USA (RCSB)
#rsync -rlpt -v -z --delete --port=33444 rsync.wwpdb.org::emdb/structures/EMD-${entry}/ ./EMD-${entry} 

# download from ASIA (PDBj)
#rsync -rlpt -v -z --delete ftp.pdbj.org::emdb/structures/EMD-${entry}/ ./EMD-${entry}

end